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Species belonging to selected taxon:

Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST041077
species: Gossypium raimondii
miRNA family: MIR157
source: miRBase, original name: gra-MIR157b (MI0005643)

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTATGCTTCTGTCATCA

mismatches: 1
bulges: 1

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pre-miRNA
GTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTTGCCTATGTGCATGCATCCCACTCCTTTGTGCTCTCTATGCTTCTGTCATCATC

dot-bracket secondary structure
..((.(((((((((((((((((((((((.(((((((((((......))).)))..))).)).)))))))))))))).))))))))).))..


SIMILARITIES
miRBase ptc-MIR156j: 5e-18

PMRD gra-miR157b: 1e-46

microPC miR157: 0.0000000000003
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"




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